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Nix
at master
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# build-system hatch-vcs, hatchling,
# dependencies numpy, packaging, importlib-resources, typing-extensions,
# optional-dependencies pydicom, pillow, h5py, scipy,
addBinToPathHook, gitMinimal, pytest-doctestplus, pytest-httpserver, pytest-xdist, pytest7CheckHook,}:
buildPythonPackage (finalAttrs: { pname = "nibabel"; version = "5.3.3"; pyproject = true;
src = fetchFromGitHub { owner = "nipy"; repo = "nibabel"; tag = finalAttrs.version; hash = "sha256-Kdz7kCY5QnA9OiV/FPW1RerjP1GGLn+YaTwFpA0dJAM="; };
patches = [ (fetchpatch2 { url = "https://github.com/nipy/nibabel/commit/3f40a3bc0c4bd996734576a15785ad0f769a963a.patch?full_index=1"; hash = "sha256-URsxgP6Sd5IIOX20GtAYtWBWOhw+Hiuhgu1oa8o8NXk="; }) ];
build-system = [ hatch-vcs hatchling ];
dependencies = [ numpy packaging ] ++ lib.optionals (pythonOlder "3.12") [ importlib-resources ] ++ lib.optionals (pythonOlder "3.13") [ typing-extensions ];
optional-dependencies = lib.fix (self: { all = self.dicom ++ self.dicomfs ++ self.minc2 ++ self.spm ++ self.zstd; dicom = [ pydicom ]; dicomfs = [ pillow ] ++ self.dicom; minc2 = [ h5py ]; spm = [ scipy ]; zstd = [ # TODO: pyzstd ]; });
nativeCheckInputs = [ addBinToPathHook gitMinimal pytest-doctestplus pytest-httpserver pytest-xdist pytest7CheckHook ] ++ finalAttrs.passthru.optional-dependencies.all;
disabledTests = lib.optionals (pythonAtLeast "3.14") [ # https://github.com/nipy/nibabel/issues/1390 "test_deprecator_maker" ];
meta = { homepage = "https://nipy.org/nibabel"; changelog = "https://github.com/nipy/nibabel/blob/${finalAttrs.version}/Changelog"; description = "Access a multitude of neuroimaging data formats"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ ashgillman ]; };})