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Nix
at master
123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116{ lib, stdenv, buildPythonPackage, fetchFromGitHub,
# build-system setuptools,
# dependencies matplotlib, numpy, pandas, pywavelets, requests, scikit-learn, scipy,
# tests astropy, coverage, mock, plotly, pytest-cov-stub, pytestCheckHook, writableTmpDirAsHomeHook,}:
buildPythonPackage rec { pname = "neurokit2"; version = "0.2.12"; pyproject = true;
src = fetchFromGitHub { owner = "neuropsychology"; repo = "NeuroKit"; tag = "v${version}"; hash = "sha256-gn02l0vYl+/7hXp4gFVlgblxC4dewXckW3JL3wPC89Y="; };
postPatch = '' substituteInPlace setup.py \ --replace-fail '"pytest-runner", ' "" '';
build-system = [ setuptools ];
dependencies = [ matplotlib numpy pandas pywavelets requests scikit-learn scipy ];
nativeCheckInputs = [ pytest-cov-stub mock plotly astropy coverage pytestCheckHook writableTmpDirAsHomeHook ];
disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [ # Crash in matplotlib (Fatal Python error: Aborted) "test_events_plot" ];
disabledTestPaths = [ # Required dependencies not available in nixpkgs "tests/tests_bio.py" "tests/tests_complexity.py" "tests/tests_data.py" "tests/tests_ecg.py" "tests/tests_ecg_delineate.py" "tests/tests_ecg_findpeaks.py" "tests/tests_eda.py" "tests/tests_eeg.py" "tests/tests_emg.py" "tests/tests_eog.py" "tests/tests_epochs.py" "tests/tests_hrv.py" "tests/tests_ppg.py" "tests/tests_rsp.py" "tests/tests_signal.py"
# Dependency is broken `mne-python` "tests/tests_microstates.py" ];
pytestFlags = [ # Otherwise, test collection fails with: # AttributeError: module 'scipy.ndimage._delegators' has no attribute '@py_builtins_signature'. Did you mean: 'grey_dilation_signature'? # https://github.com/scipy/scipy/issues/22236 "--assert=plain" ];
pythonImportsCheck = [ "neurokit2" ];
meta = { description = "Python Toolbox for Neurophysiological Signal Processing"; homepage = "https://github.com/neuropsychology/NeuroKit"; changelog = "https://github.com/neuropsychology/NeuroKit/releases/tag/${src.tag}"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ genga898 ]; };}