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2.5 kB · 125 lines
Nix
at master
123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126{ lib, buildPythonPackage, fetchFromGitHub, pythonAtLeast, stdenv, hatchling, hatch-vcs, numpy, scipy, flaky, pandas, pytestCheckHook, pytest-cov-stub, pytest-timeout, writableTmpDirAsHomeHook, matplotlib, decorator, jinja2, pooch, tqdm, packaging, lazy-loader, h5io, pymatreader, procps, optipng,}:
buildPythonPackage rec { pname = "mne"; version = "1.12.0"; pyproject = true;
src = fetchFromGitHub { owner = "mne-tools"; repo = "mne-python"; tag = "v${version}"; hash = "sha256-j5PpUF7Yle8mFtIjawDaulq1s7zzVPpT3Y4+xNbQ+fk="; };
postPatch = '' substituteInPlace doc/conf.py \ --replace-fail '"optipng"' '"${lib.getExe optipng}"' substituteInPlace mne/utils/config.py \ --replace-fail '"free"' '"${lib.getExe' procps "free"}"' \ --replace-fail '"sysctl"' '"${lib.getExe' procps "sysctl"}"' '';
build-system = [ hatchling hatch-vcs ];
dependencies = [ numpy scipy matplotlib tqdm pooch decorator packaging jinja2 lazy-loader ];
optional-dependencies.hdf5 = [ h5io pymatreader ];
nativeCheckInputs = [ flaky pandas pytestCheckHook pytest-cov-stub pytest-timeout writableTmpDirAsHomeHook ] ++ lib.concatAttrValues optional-dependencies;
preCheck = '' export MNE_SKIP_TESTING_DATASET_TESTS=true export MNE_SKIP_NETWORK_TESTS=1 '';
disabledTests = [ # requires qtbot which is unmaintained/not in Nixpkgs: "test_plotting_scalebars" # tries to write a datetime object to hdf5, which fails: "test_hitachi_basic" # flaky "test_fine_cal_systems" "test_simulate_raw_bem" ] ++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [ # Fails when no "model name" is present in /proc/cpuinfo, # which is common on Arm Linux systems "test_sys_info_basic" ];
pytestFlag = [ # removes 700k lines from pytest log, remove this when scipy is at v1.17.0 "--disable-warnings" ];
disabledTestMarks = [ "slowtest" "ultraslowtest" "pgtest" ];
pythonImportsCheck = [ "mne" ];
meta = { description = "Magnetoencephelography and electroencephalography in Python"; mainProgram = "mne"; homepage = "https://mne.tools"; changelog = "https://mne.tools/stable/changes/v${lib.versions.majorMinor version}.html"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ bcdarwin ]; };}