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at master
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# build-system setuptools,
# dependencies appdirs, mhcgnomes, numpy, pandas, pyyaml, scikit-learn, torch, tqdm,
# tests pytestCheckHook,}:
buildPythonPackage (finalAttrs: { pname = "mhcflurry"; version = "2.2.1"; pyproject = true;
src = fetchFromGitHub { owner = "openvax"; repo = "mhcflurry"; tag = "v${finalAttrs.version}"; hash = "sha256-Vtlj6aK4o7rjhWeTaso/RBZWZFdoZy54AlTrYWUoGfE="; };
build-system = [ setuptools ];
# keras and tensorflow are not in the official setup.py requirements but are required for the CLI utilities to run. dependencies = [ appdirs mhcgnomes numpy pandas pyyaml scikit-learn torch tqdm ];
nativeCheckInputs = [ pytestCheckHook ];
disabledTests = [ # RuntimeError: Missing MHCflurry downloadable file: /homeless-shelter/.local... "test_a1_mage_epitope_downloaded_models" "test_a1_titin_epitope_downloaded_models" "test_a2_hiv_epitope_downloaded_models" "test_allele_specific_affinity_predictions" "test_basic" "test_caching" "test_class1_neural_network_a0205_training_accuracy" "test_commandline_sequences" "test_correlation" "test_csv" "test_downloaded_predictor" "test_downloaded_predictor_gives_percentile_ranks" "test_downloaded_predictor_invalid_peptides" "test_downloaded_predictor_is_savable" "test_downloaded_predictor_is_serializable" "test_downloaded_predictor_small" "test_fasta" "test_fasta_50nm" "test_fasta_best" "test_merge" "test_no_csv" "test_on_hpv" "test_pan_allele_affinity_predictions" "test_presentation_predictions" "test_run_cluster_parallelism" "test_run_parallel" "test_run_serial" "test_selected_peptides_mhcflurry_matches_csv" "test_selected_peptides_netmhcpan_affinity_close" "test_speed_allele_specific" "test_speed_pan_allele" ];
disabledTestPaths = [ # RuntimeError: Missing MHCflurry downloadable file: /homeless-shelter/.local... "test/test_changing_allele_representations.py" "test/test_class1_affinity_predictor.py" "test/test_class1_pan.py" ];
pythonImportsCheck = [ "mhcflurry" ];
meta = { description = "Peptide-MHC I binding affinity prediction"; homepage = "https://github.com/openvax/mhcflurry"; changelog = "https://github.com/openvax/mhcflurry/releases/tag/${finalAttrs.src.tag}"; license = lib.licenses.asl20; maintainers = with lib.maintainers; [ samuela ]; };})