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12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970{ lib, biopython, buildPythonPackage, docopt, fetchFromGitHub, flametree, genome-collector, matplotlib, numpy, primer3, proglog, pytestCheckHook, python-codon-tables, setuptools,}:
buildPythonPackage rec { pname = "dnachisel"; version = "3.2.16"; pyproject = true;
src = fetchFromGitHub { owner = "Edinburgh-Genome-Foundry"; repo = "DnaChisel"; tag = "v${version}"; hash = "sha256-F+G7dwehUCHYKSGsLQR4OZg2NQ4677XMlN6jOcmz8No="; };
build-system = [ setuptools ];
dependencies = [ biopython docopt flametree numpy proglog python-codon-tables ];
nativeCheckInputs = [ primer3 genome-collector matplotlib pytestCheckHook ];
# Disable tests which requires network access disabledTests = [ "test_circular_sequence_optimize_with_report" "test_constraints_reports" "test_optimize_with_report" "test_optimize_with_report_no_solution" "test_avoid_blast_matches_with_list" "test_avoid_phage_blast_matches" "test_avoid_matches_with_list" "test_avoid_matches_with_phage" ];
pythonImportsCheck = [ "dnachisel" ];
meta = { homepage = "https://github.com/Edinburgh-Genome-Foundry/DnaChisel"; description = "Optimize DNA sequences under constraints"; changelog = "https://github.com/Edinburgh-Genome-Foundry/DnaChisel/releases/tag/${src.tag}"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ prusnak ]; };}