Something went wrong. Try again.
lol
Something went wrong. Try again.
1.3 kB · 57 lines
Nix
at master
12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758{ lib, buildPythonPackage, fetchPypi, fetchpatch, setuptools, numpy,}:
buildPythonPackage rec { pname = "biopython"; version = "1.86"; pyproject = true;
src = fetchPypi { inherit pname version; hash = "sha256-k6ULWGpNLOxoqy+Z0D71g8V2HY+6VTXLjoHaeB0Nkv8="; };
patches = [ # Numpy 2.4 compatibility (fetchpatch { url = "https://github.com/biopython/biopython/pull/5161.patch"; hash = "sha256-oN0nNlhvshIgNrmm+tIeCAJx1U/OqhdL4tj51DV2CHU="; }) ];
build-system = [ setuptools ];
dependencies = [ numpy ];
pythonImportsCheck = [ "Bio" ];
checkPhase = '' runHook preCheck
export HOME=$(mktemp -d) cd Tests python run_tests.py --offline
runHook postCheck '';
meta = { description = "Python library for bioinformatics"; longDescription = '' Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ''; homepage = "https://biopython.org/wiki/Documentation"; maintainers = with lib.maintainers; [ luispedro ]; license = lib.licenses.bsd3; };}