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at master
123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143{ lib, stdenv, buildPythonPackage, fetchFromGitHub,
# nativeBuildInputs writableTmpDirAsHomeHook,
# build-system packaging, setuptools,
# dependencies h5netcdf, matplotlib, numpy, pandas, platformdirs, scipy, typing-extensions, xarray, xarray-einstats,
# tests bokeh, cloudpickle, emcee, ffmpeg, h5py, jax, jaxlib, numba, numpyro, #, pymc3 (circular dependency) pyro-ppl, #, pystan (not packaged) pytestCheckHook, torchvision, zarr,}:
buildPythonPackage (finalAttrs: { pname = "arviz"; version = "0.23.4"; pyproject = true;
src = fetchFromGitHub { owner = "arviz-devs"; repo = "arviz"; tag = "v${finalAttrs.version}"; hash = "sha256-YQ5i+CSuznbWAQ29jgqrOs+zgOAS5U4wSNEIquJQkvY="; };
nativeBuildInputs = [ # Arviz wants to write a stamp file to the homedir at import time. # Without $HOME being writable, `pythonImportsCheck` fails. # https://github.com/arviz-devs/arviz/commit/4db612908f588d89bb5bfb6b83a08ada3d54fd02 writableTmpDirAsHomeHook ];
build-system = [ packaging setuptools ];
dependencies = [ h5netcdf h5py matplotlib numpy pandas platformdirs scipy typing-extensions xarray xarray-einstats ];
nativeCheckInputs = [ bokeh cloudpickle emcee ffmpeg jax jaxlib numba numpyro # pymc3 (circular dependency) pyro-ppl # pystan (not packaged) pytestCheckHook torchvision zarr ];
enabledTestPaths = [ "arviz/tests/base_tests/" ];
disabledTestPaths = [ # AttributeError: module 'zarr.storage' has no attribute 'DirectoryStore' # https://github.com/arviz-devs/arviz/issues/2357 "arviz/tests/base_tests/test_data_zarr.py::TestDataZarr::test_io_function" "arviz/tests/base_tests/test_data_zarr.py::TestDataZarr::test_io_method" ];
disabledTests = [ # TypeError: only 0-dimensional arrays can be converted to Python scalars "test_deterministic" "test_mcse_array" "test_mcse_dataset" "test_mcse_nan" "test_multichain_summary_array" "test_numba_mcse" "test_plot_mcse"
# Tests require network access "test_plot_ppc_transposed" "test_plot_separation" "test_plot_trace_legend" "test_cov"
# countourpy is not available at the moment "test_plot_kde" "test_plot_kde_2d" "test_plot_pair" ];
# Tests segfault on darwin doCheck = !stdenv.hostPlatform.isDarwin;
pythonImportsCheck = [ "arviz" ];
meta = { description = "Library for exploratory analysis of Bayesian models"; homepage = "https://arviz-devs.github.io/arviz/"; changelog = "https://github.com/arviz-devs/arviz/blob/${finalAttrs.src.tag}/CHANGELOG.md"; license = lib.licenses.asl20; maintainers = with lib.maintainers; [ omnipotententity ]; };})