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What happens if I push all of nixpkgs
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2.0 kB · 91 lines
Nix
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buildPythonPackage rec { pname = "cmdstanpy"; version = "1.2.5"; pyproject = true;
src = fetchFromGitHub { owner = "stan-dev"; repo = "cmdstanpy"; tag = "v${version}"; hash = "sha256-/MiWawB1Y4/eMBHXQLjd+P+Pe8EtsLbGFrzQa1RNf6g="; };
patches = [ (replaceVars ./use-nix-cmdstan-path.patch { cmdstan = "${cmdstan}/opt/cmdstan"; }) ];
postPatch = '' # conftest.py would have used git to clean up, which is unnecessary here rm test/conftest.py '';
nativeBuildInputs = [ setuptools ];
propagatedBuildInputs = [ pandas numpy tqdm stanio ];
optional-dependencies = { all = [ xarray ]; };
pythonRelaxDeps = [ "stanio" ];
preCheck = '' export HOME=$(mktemp -d) '';
nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.all;
disabledTestPaths = [ # No need to test these when using Nix "test/test_install_cmdstan.py" "test/test_cxx_installation.py" ];
disabledTests = [ "test_serialization" # Pickle class mismatch errors # These tests use the flag -DSTAN_THREADS which doesn't work in cmdstan (missing file) "test_multi_proc_threads" "test_compile_force" # These tests require a writeable cmdstan source directory "test_pathfinder_threads" "test_save_profile" ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ "test_init_types" # CmdStan error: error during processing Operation not permitted ];
pythonImportsCheck = [ "cmdstanpy" ];
meta = { homepage = "https://github.com/stan-dev/cmdstanpy"; description = "Lightweight interface to Stan for Python users"; changelog = "https://github.com/stan-dev/cmdstanpy/releases/tag/v${version}"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ tomasajt ]; };}