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What happens if I push all of nixpkgs
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1.4 kB · 71 lines
Nix
at llvm-cleanup
123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172{ lib, buildPythonPackage, fetchFromGitHub, fetchpatch, setuptools, cython, click, numpy, scipy, pandas, h5py, pytestCheckHook,}:
buildPythonPackage rec { pname = "biom-format"; version = "2.1.15"; pyproject = true;
src = fetchFromGitHub { owner = "biocore"; repo = "biom-format"; rev = "refs/tags/${version}"; hash = "sha256-WRBc+C/UWme7wYogy4gH4KTIdIqU3KmBm2jWzGNxGQg="; };
patches = [ # fixes a test, can be removed in next version after 2.1.15 (fetchpatch { name = "fix-dataframe-comparison.patch"; url = "https://github.com/biocore/biom-format/commit/5d1c921ca2cde5d7332508503ce990a7209d1fdc.patch"; hash = "sha256-nyHi469ivjJSQ01yIk/6ZMXFdoo9wVuazJHnFdy2nBg="; }) ];
build-system = [ setuptools cython numpy ];
dependencies = [ click numpy scipy pandas h5py ];
# make pytest resolve the package from $out # some tests don't work if we change the level of directory nesting preCheck = '' mkdir biom_tests mv biom/tests biom_tests/tests rm -r biom '';
nativeCheckInputs = [ pytestCheckHook ];
pytestFlagsArray = [ "biom_tests/tests" ];
pythonImportsCheck = [ "biom" ];
meta = { homepage = "http://biom-format.org/"; description = "Biological Observation Matrix (BIOM) format"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ tomasajt ]; };}