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What happens if I push all of nixpkgs
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1.4 kB · 57 lines
Nix
at gcc-offload
12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758{ lib, buildPythonPackage, fetchPypi, pythonOlder, setuptools, numpy,}:
buildPythonPackage rec { pname = "biopython"; version = "1.83"; pyproject = true;
disabled = pythonOlder "3.9";
src = fetchPypi { inherit pname version; hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c="; };
patches = [ # cherry-picked from https://github.com/biopython/biopython/commit/3f9bda7ef44f533dadbaa0de29ac21929bc0b2f1 # fixes SeqXMLIO parser to process all data. remove on next update ./close_parser_on_time.patch ];
build-system = [ setuptools ];
dependencies = [ numpy ];
pythonImportsCheck = [ "Bio" ];
checkPhase = '' runHook preCheck
export HOME=$(mktemp -d) cd Tests python run_tests.py --offline
runHook postCheck '';
meta = { description = "Python library for bioinformatics"; longDescription = '' Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ''; homepage = "https://biopython.org/wiki/Documentation"; maintainers = with lib.maintainers; [ luispedro ]; license = lib.licenses.bsd3; };}