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What happens if I push all of nixpkgs
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Nix
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{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, castxml, swig, expat, eigen, fftw, gdcm, hdf5-cpp, libjpeg, libminc, libtiff, libpng, libX11, libuuid, patchelf, python ? null, numpy ? null, xz, vtk, which, zlib, enablePython ? false, enableRtk ? true,}:
let # Python wrapper contains its own VTK support incompatible with MODULE_ITKVtkGlue withVtk = !enablePython;
itkGenericLabelInterpolatorSrc = fetchFromGitHub { owner = "InsightSoftwareConsortium"; repo = "ITKGenericLabelInterpolator"; rev = "2f3768110ffe160c00c533a1450a49a16f4452d9"; hash = "sha256-Cm3jg14MMnbr/sP+gqR2Rh25xJjoRvpmY/jP/DKH978="; };
itkAdaptiveDenoisingSrc = fetchFromGitHub { owner = "ntustison"; repo = "ITKAdaptiveDenoising"; rev = "24825c8d246e941334f47968553f0ae388851f0c"; hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go="; };
itkSimpleITKFiltersSrc = fetchFromGitHub { owner = "InsightSoftwareConsortium"; repo = "ITKSimpleITKFilters"; rev = "bb896868fc6480835495d0da4356d5db009592a6"; hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4="; };
rtkSrc = fetchFromGitHub { owner = "RTKConsortium"; repo = "RTK"; rev = "583288b1898dedcfb5e4d602e31020b452971383"; hash = "sha256-1ItsLCRwRzGDSRe4xUDg09Hksu1nKichbWuM0YSVkbM="; };in
stdenv.mkDerivation { pname = "itk"; inherit version;
src = fetchFromGitHub { owner = "InsightSoftwareConsortium"; repo = "ITK"; inherit tag; sha256 = sourceSha256; };
patches = lib.optionals (lib.versionOlder version "5.4") [ (fetchpatch { name = "fix-gcc13-build"; url = "https://github.com/InsightSoftwareConsortium/ITK/commit/9a719a0d2f5f489eeb9351b0ef913c3693147a4f.patch"; hash = "sha256-dDyqYOzo91afR8W7k2N64X6l7t6Ws1C9iuRkWHUe0fg="; }) ];
postPatch = '' substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \ --replace "-march=corei7" "" \ --replace "-mtune=native" "" ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters ln -sr ${rtkSrc} Modules/Remote/RTK '';
cmakeFlags = [ "-DBUILD_EXAMPLES=OFF" "-DBUILD_SHARED_LIBS=ON" "-DITK_FORBID_DOWNLOADS=ON" "-DITK_USE_SYSTEM_LIBRARIES=ON" # finds common libraries e.g. hdf5, libpng, libtiff, zlib, but not GDCM, NIFTI, MINC, etc. (lib.cmakeBool "ITK_USE_SYSTEM_EIGEN" (lib.versionAtLeast version "5.4")) "-DITK_USE_SYSTEM_GOOGLETEST=OFF" # ANTs build failure due to https://github.com/ANTsX/ANTs/issues/1489 "-DITK_USE_SYSTEM_GDCM=ON" "-DITK_USE_SYSTEM_MINC=ON" "-DLIBMINC_DIR=${libminc}/lib/cmake" "-DModule_ITKMINC=ON" "-DModule_ITKIOMINC=ON" "-DModule_ITKIOTransformMINC=ON" "-DModule_SimpleITKFilters=ON" "-DModule_ITKReview=ON" "-DModule_MGHIO=ON" "-DModule_AdaptiveDenoising=ON" "-DModule_GenericLabelInterpolator=ON" ] ++ lib.optionals enableRtk [ "-DModule_RTK=ON" ] ++ lib.optionals enablePython [ "-DITK_WRAP_PYTHON=ON" "-DITK_USE_SYSTEM_CASTXML=ON" "-DITK_USE_SYSTEM_SWIG=ON" "-DPY_SITE_PACKAGES_PATH=${placeholder "out"}/${python.sitePackages}" ] ++ lib.optionals withVtk [ "-DModule_ITKVtkGlue=ON" ];
nativeBuildInputs = [ cmake xz ] ++ lib.optionals enablePython [ castxml swig which ];
buildInputs = [ libX11 libuuid ] ++ lib.optionals (lib.versionAtLeast version "5.4") [ eigen ] ++ lib.optionals enablePython [ python ] ++ lib.optionals withVtk [ vtk ]; # Due to ITKVtkGlue=ON and the additional dependencies needed to configure VTK 9 # (specifically libGL and libX11 on Linux), # it's now seemingly necessary for packages that configure ITK to # also include configuration deps of VTK, even if VTK is not required or available. # These deps were propagated from VTK 9 in https://github.com/NixOS/nixpkgs/pull/206935, # so we simply propagate them again from ITK. # This admittedly is a hack and seems like an issue with VTK 9's CMake configuration. propagatedBuildInputs = [ # The dependencies we've un-vendored from ITK, such as GDCM, must be propagated, # otherwise other software built against ITK fails to configure since ITK headers # refer to these previously vendored libraries: expat fftw gdcm hdf5-cpp libjpeg libminc libpng libtiff zlib ] ++ lib.optionals withVtk vtk.propagatedBuildInputs ++ lib.optionals enablePython [ numpy ];
postInstall = lib.optionalString enablePython '' substitute \ ${./itk.egg-info} \ $out/${python.sitePackages}/itk-${version}.egg-info \ --subst-var-by ITK_VER "${version}" '';
# remove forbidden reference to /build which occur when building the Python wrapping # (also remove a copy of itkTestDriver with incorrect permissions/RPATH): preFixup = lib.optionals enablePython '' rm $out/${python.sitePackages}/itk/itkTestDriver find $out/${python.sitePackages}/itk -type f -name '*.so*' -exec \ patchelf {} --shrink-rpath --allowed-rpath-prefixes "$NIX_STORE" \; '';
meta = { description = "Insight Segmentation and Registration Toolkit"; homepage = "https://www.itk.org"; license = lib.licenses.asl20; maintainers = with lib.maintainers; [ bcdarwin ]; # aarch64-linux Python wrapping fails with "error: unknown type name '_Float128'" and similar; # compilation runs slowly and times out on Darwin platforms = with lib.platforms; if enablePython then [ "x86_64-linux" ] else unix; };}